![]() ![]() Use of gzip format is determined based on the. It works with FASTQ (using phred + 33 or phred + 64 quality scores, depending on the Illumina pipeline used), either uncompressed or gzipp'ed FASTQ. TOPHRED64: Convert quality scores to Phred-64.TOPHRED33: Convert quality scores to Phred-33.MINLEN: Drop the read if it is below a specified length.HEADCROP: Cut the specified number of bases from the start of the read.CROP: Cut the read to a specified length.TRAILING: Cut bases off the end of a read, if below a threshold quality.LEADING: Cut bases off the start of a read, if below a threshold quality.SLIDINGWINDOW: Perform a sliding window trimming, cutting once the average quality within the window falls below a threshold.ILLUMINACLIP: Cut adapter and other illumina-specific sequences from the read.Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. ![]()
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